TY - JOUR
T1 - Genomics, environment and balancing selection in behaviorally bimodal populations
T2 - the caribou case
AU - Cavedon, Maria
AU - Goubili, Chrysoula
AU - Heppenheimer, Elizabeth
AU - vonHoldt, Bridgett
AU - Mariani, Stefano
AU - Hebblewhite, Mark
AU - Hegel, Troy
AU - Hervieux, Dave
AU - Serrouya, Robert
AU - Steenweg, Robin
AU - Weckworth, Byron V
AU - Musiani, Marco
N1 - This article is protected by copyright. All rights reserved.
PY - 2019/2/3
Y1 - 2019/2/3
N2 - Selection forces that favor different phenotypes in different environments can change frequencies of genes between populations along environmental clines. Clines are also compatible with balancing forces, such as negative frequency-dependent selection (NFDS), which maintains phenotypic polymorphisms within populations. For example, NFDS is hypothesized to maintain partial migration, a dimorphic behavioral trait prominent in species where only a fraction of the population seasonally migrates. Overall, NFDS is believed to be a common phenomenon in nature, yet, a scarcity of studies were published linking naturally occurring allelic variation with bimodal or multimodal phenotypes and balancing selection. We applied a Pool-seq approach and detected selection on alleles associated with environmental variables along a North-South gradient in western North American caribou, a species displaying partially migratory behavior. On 51 loci, we found a signature of balancing selection, which could be related to NFDS and ultimately the maintenance of the phenotypic polymorphisms known within these populations. Yet, remarkably, we detected directional selection on a locus when our sample was divided in two behaviorally distinctive groups regardless of geographic provenance (a subset of GPS-collared migratory or sedentary individuals), indicating that, within populations, phenotypically homogeneous groups were genetically distinctive. Loci under selection were linked to functional genes involved in oxidative stress response, body development and taste perception. Overall, results indicated genetic differentiation along an environmental gradient of caribou populations, which we found characterized by genes potentially undergoing balancing selection. We suggest that the underlining balancing force, NFDS plays a strong role within populations harboring multiple haplotypes and phenotypes, as it is the norm in animals, plants and humans too. This article is protected by copyright. All rights reserved.
AB - Selection forces that favor different phenotypes in different environments can change frequencies of genes between populations along environmental clines. Clines are also compatible with balancing forces, such as negative frequency-dependent selection (NFDS), which maintains phenotypic polymorphisms within populations. For example, NFDS is hypothesized to maintain partial migration, a dimorphic behavioral trait prominent in species where only a fraction of the population seasonally migrates. Overall, NFDS is believed to be a common phenomenon in nature, yet, a scarcity of studies were published linking naturally occurring allelic variation with bimodal or multimodal phenotypes and balancing selection. We applied a Pool-seq approach and detected selection on alleles associated with environmental variables along a North-South gradient in western North American caribou, a species displaying partially migratory behavior. On 51 loci, we found a signature of balancing selection, which could be related to NFDS and ultimately the maintenance of the phenotypic polymorphisms known within these populations. Yet, remarkably, we detected directional selection on a locus when our sample was divided in two behaviorally distinctive groups regardless of geographic provenance (a subset of GPS-collared migratory or sedentary individuals), indicating that, within populations, phenotypically homogeneous groups were genetically distinctive. Loci under selection were linked to functional genes involved in oxidative stress response, body development and taste perception. Overall, results indicated genetic differentiation along an environmental gradient of caribou populations, which we found characterized by genes potentially undergoing balancing selection. We suggest that the underlining balancing force, NFDS plays a strong role within populations harboring multiple haplotypes and phenotypes, as it is the norm in animals, plants and humans too. This article is protected by copyright. All rights reserved.
U2 - 10.1111/mec.15039
DO - 10.1111/mec.15039
M3 - Article
C2 - 30714247
SN - 0962-1083
JO - Molecular Ecology
JF - Molecular Ecology
ER -